miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccactaactagatctttgattt 43
||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcactaattagatctatgattt 50
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 132 gttagtgacgtcggaccaggcttcattcc 160
|||||||||||||||||||||||||||||
Sbjct: 86 gttagtgacgtcggaccaggcttcattcc 114
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccactaactagatctttgat 41
||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 8 ggaatgttgtctggctcgaggacaccaactagatctatgat 48
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccactaactagatctttgatttaatctcagttgat 56
||||||||||||||||||||| |||||| ||||| |||||| |||||| |||||
Sbjct: 8 ggaatgttgtctggctcgaggtcactaatgggatctatgattttatctcaattgat 63
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccactaactagatc 35
||||||||||||||||||||| ||| |||||||||
Sbjct: 6 ggaatgttgtctggctcgaggtcaccaactagatc 40
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 131 agttagtgacgtcggaccaggcttcattcc 160
|||||||| ||||||||||||||||||||
Sbjct: 151 agttagtgttgtcggaccaggcttcattcc 180
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 131 agttagtgacgtcggaccaggcttcattcc 160
|||||||| |||||||||||||||||||||
Sbjct: 100 agttagtgtcgtcggaccaggcttcattcc 129
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 132 gttagtgacgtcggaccaggcttcattcc 160
|||| ||||||||||||||||||||||||
Sbjct: 110 gttaatgacgtcggaccaggcttcattcc 138
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 137 tgacgtcggaccaggcttcattcc 160
||||||||||||||||||||||||
Sbjct: 92 tgacgtcggaccaggcttcattcc 115
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 133 ttagtgacgtcggaccaggcttcattcc 160
|||||| |||||||||||||||||||||
Sbjct: 88 ttagtgtcgtcggaccaggcttcattcc 115
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccactaactagatc 35
||||||||||||||||||||| ||| || ||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcaccaattagatc 42
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 135 agtgacgtcggaccaggcttcattcc 160
|||| |||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattcc 126
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggccact 26
||||||||||||||||||||| ||||
Sbjct: 8 ggaatgttgtctggctcgaggacact 33
