miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcatcaac 37
||||||||||||||||||||||| |||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcatcaac 47
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 113 agtgagttagtccttcatgtgcccctcttcccca 146
||||||||| | |||||||||||||||||||||
Sbjct: 56 agtgagttaacctttcatgtgcccctcttcccca 89
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 112 cagtgagttagtccttcatgtgcccctcttcccca 146
|||||||||||| ||||||||||||||||||||||
Sbjct: 251 cagtgagttagtgcttcatgtgcccctcttcccca 285
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||||| |||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||||| |||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatactaactcat 43
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 115 tgagttagtccttcatgtgcccctcttcccca 146
||||||||| ||||||||||||||||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttcccca 143
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 110 tgcagtgagttagtccttcatgtgcccctcttcccca 146
|||||| ||||||| ||||||||||||||||||||||
Sbjct: 244 tgcagtaagttagtacttcatgtgcccctcttcccca 280
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
|||||||||||||||||||||| |||||||||
Sbjct: 11 tggagaagcagggcacgtgcaacactaactcat 43
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcat 43
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 115 tgagttagtccttcatgtgcccctcttcccca 146
||||||||| |||||||||||| |||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttcccca 105
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 3 tggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattc 25
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaattc 35
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaattctaactcat 33
||||||||||||||||||||| | |||||||||
Sbjct: 11 tggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaat 23
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaat 33
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 116 gagttagtccttcatgtgcccctcttcccca 146
||||| || ||||||||||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttcccca 150
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggagaagcagggcacgtgcaa 22
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
