miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 61
|||||||||||||||||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 62 ccc 64
|||
Sbjct: 73 ccc 75
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 95 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 154
|||||||||||||| |||||| ||||||| | | | | ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaa 172
Query: 155 gggagctct 163
|||||||||
Sbjct: 173 gggagctct 181
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 58.0 bits (29), Expect = 4e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 21 agaggatctgagtgggaatatcgagctgctggtctatggatccctcaagtcctatct 77
||||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaa-tcctatct 87
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 agagctccttgaagtccaatagaggat 27
|||||||||||||||||||||||||||
Sbjct: 12 agagctccttgaagtccaatagaggat 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 137 atccttttttggattgaagggagctct 163
|||||| ||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 54.0 bits (27), Expect = 6e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 61
|||||||||||||||||||||||| ||| | |||| | || ||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 62 ccc 64
|||
Sbjct: 73 ccc 75
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 95 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 154
|||||||||||||| |||||| | |||||||| || ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaa 172
Query: 155 gggagctct 163
|||||||||
Sbjct: 173 gggagctct 181
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 135 tgatccttttttggattgaagggagctct 163
||||| |||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctct 187
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
|||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaataga 23
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagagg 25
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
||||| ||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctct 173
