miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AP002855.2/37713-37949 39947:Oryza sativa Japonica
          Group
          Length = 237

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tactccccccgtttcaaaatat 22
          ||||||||||||||||||||||
Sbjct: 2  tactccccccgtttcaaaatat 23





>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
          Indica Group
          Length = 120

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 1  tactccccccgtttcaaaatataagatattttag 34
          ||||||| |||||||||||||||||  |||||||
Sbjct: 5  tactccctccgtttcaaaatataagggattttag 38





>RF00906;MIR1122;AC136219.2/91733-91617 39947:Oryza sativa Japonica
           Group
          Length = 117

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 1   tactccccccgtttcaaaatataaga 26
           ||||||| ||||||||||||||||||
Sbjct: 113 tactccctccgtttcaaaatataaga 88