miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 137 bits (69), Expect = 3e-32
Identities = 94/100 (94%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggactaattcgctgacacagccacgtggctctttttcttattg 60
||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||
Sbjct: 19 tcgcttggtgcaggtcgggactaatccgctgacacagccacgtg--tcttttacttattg 76
Query: 61 gtttgtgagcagggattggatcccgccttgcatcaactga 100
| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 77 g-ttgtgagcagggattggctcccgccttgcatcaactga 115
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 105 bits (53), Expect = 1e-22
Identities = 91/101 (90%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
|||||||||||||||||||| |||||| |||||||| |||||||| | || | || ||
Sbjct: 19 tcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagttttcct-ttgtt 77
Query: 60 ggtttgtgagcagggattggatcccgccttgcatcaactga 100
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ggtttgtgagcagggattggatcccgccttgcatcaactga 118
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 97.6 bits (49), Expect = 3e-20
Identities = 90/101 (89%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
|||||||||||||||||||| |||||| ||||||||||||||||| || | | || |||
Sbjct: 19 tcgcttggtgcaggtcgggaactaattggctgacacagccacgtgact-taatcctcatt 77
Query: 60 ggtttgtgagcagggattggatcccgccttgcatcaactga 100
|| |||||| |||| ||||||||||||||||||||||||||
Sbjct: 78 ggcttgtgaccaggaattggatcccgccttgcatcaactga 118
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 97.6 bits (49), Expect = 3e-20
Identities = 93/104 (89%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
|||||||||||||||||||| | |||||| ||||||||||| |||| || || | ||
Sbjct: 19 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 78
Query: 57 attggtttgtgagcagggattggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 attggtttgtgagcagggattggatcccgccttgcatcaactga 122
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 91.7 bits (46), Expect = 2e-18
Identities = 91/102 (89%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
|||||||||||||||||||| | || | ||||||||||||||||| || | | ||| ||
Sbjct: 19 tcgcttggtgcaggtcgggaaccaactggctgacacagccacgtgact-tgtaccttgtt 77
Query: 60 ggtttgtgagc-agggattggatcccgccttgcatcaactga 100
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 78 ggtttgtgagccagggattggatcccgccttgcatcaactga 119
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 85.7 bits (43), Expect = 1e-16
Identities = 90/102 (88%), Gaps = 4/102 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcgctgac-acagccacgtggctctttttcttat 58
|||||||||||||||||||| || ||| |||| ||||||||||||| || || |||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctggttacagccacgtggcgtttctt--tat 76
Query: 59 tggtttgtgagcagggattggatcccgccttgcatcaactga 100
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 77 tggtttgtgagcagtgattggatcccgccttgcatcaactga 118
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 77.8 bits (39), Expect = 2e-14
Identities = 84/97 (86%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
|||||||||||||||||||| | |||| |||||||| ||||| | |||| ||| |
Sbjct: 19 tcgcttggtgcaggtcgggaaccaattgtctgacacatccacgaag---ttttacttgct 75
Query: 60 ggtttgtgagcagggattggatcccgccttgcatcaa 96
|||||||||||||||||||||||||||||||||||||
Sbjct: 76 ggtttgtgagcagggattggatcccgccttgcatcaa 112
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 6e-09
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggg-actaattcgctgacacagccacgtgg 45
||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 64
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 ggattggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactga 116
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 58 ttggtttgtgagcagggattggatcccgccttgcatcaactga 100
|||| |||||||||||||| |||||| ||||| ||||||||||
Sbjct: 21 ttggcttgtgagcagggatcggatcctgccttccatcaactga 63
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactga 57
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactga 160
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactga 136
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactga 137
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 attggatcccgccttgcatcaactga 100
||||||||||||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactga 102
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 57 attggtttgtgagcagggattggatcccgccttgcatcaactga 100
||||| |||||| | | ||| |||||||||||||||||||||||
Sbjct: 74 attggcttgtgaccggcgatcggatcccgccttgcatcaactga 117
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactga 100
||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactga 90
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gatcccgccttgcatcaactga 100
||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactga 128
