miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score =  137 bits (69), Expect = 3e-32
 Identities = 94/100 (94%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggactaattcgctgacacagccacgtggctctttttcttattg 60
           ||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||
Sbjct: 19  tcgcttggtgcaggtcgggactaatccgctgacacagccacgtg--tcttttacttattg 76

                                                   
Query: 61  gtttgtgagcagggattggatcccgccttgcatcaactga 100
           | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 77  g-ttgtgagcagggattggctcccgccttgcatcaactga 115




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score =  105 bits (53), Expect = 1e-22
 Identities = 91/101 (90%), Gaps = 2/101 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
           |||||||||||||||||||| |||||| |||||||| ||||||||  | ||  | || ||
Sbjct: 19  tcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagttttcct-ttgtt 77

                                                    
Query: 60  ggtttgtgagcagggattggatcccgccttgcatcaactga 100
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ggtttgtgagcagggattggatcccgccttgcatcaactga 118




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 90/101 (89%), Gaps = 2/101 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
           |||||||||||||||||||| |||||| ||||||||||||||||| || |  | || |||
Sbjct: 19  tcgcttggtgcaggtcgggaactaattggctgacacagccacgtgact-taatcctcatt 77

                                                    
Query: 60  ggtttgtgagcagggattggatcccgccttgcatcaactga 100
           || |||||| |||| ||||||||||||||||||||||||||
Sbjct: 78  ggcttgtgaccaggaattggatcccgccttgcatcaactga 118




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 93/104 (89%), Gaps = 4/104 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
           |||||||||||||||||||| | |||||| ||||||||||| |||| || ||   |  ||
Sbjct: 19  tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 78

                                                       
Query: 57  attggtttgtgagcagggattggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  attggtttgtgagcagggattggatcccgccttgcatcaactga 122




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 91/102 (89%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
           |||||||||||||||||||| | || | ||||||||||||||||| || | |  ||| ||
Sbjct: 19  tcgcttggtgcaggtcgggaaccaactggctgacacagccacgtgact-tgtaccttgtt 77

                                                     
Query: 60  ggtttgtgagc-agggattggatcccgccttgcatcaactga 100
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 78  ggtttgtgagccagggattggatcccgccttgcatcaactga 119




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 90/102 (88%), Gaps = 4/102 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcgctgac-acagccacgtggctctttttcttat 58
           |||||||||||||||||||| || ||| ||||   |||||||||||||  || ||  |||
Sbjct: 19  tcgcttggtgcaggtcgggaactgattggctggttacagccacgtggcgtttctt--tat 76

                                                     
Query: 59  tggtttgtgagcagggattggatcccgccttgcatcaactga 100
           |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 77  tggtttgtgagcagtgattggatcccgccttgcatcaactga 118




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 84/97 (86%), Gaps = 4/97 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 59
           |||||||||||||||||||| | ||||  |||||||| |||||  |   |||| |||  |
Sbjct: 19  tcgcttggtgcaggtcgggaaccaattgtctgacacatccacgaag---ttttacttgct 75

                                                
Query: 60  ggtttgtgagcagggattggatcccgccttgcatcaa 96
           |||||||||||||||||||||||||||||||||||||
Sbjct: 76  ggtttgtgagcagggattggatcccgccttgcatcaa 112




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                        
Query: 1  tcgcttggtgcaggtcggg-actaattcgctgacacagccacgtgg 45
          ||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 64




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 73  ggattggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||||
Sbjct: 89  ggattggatcccgccttgcatcaactga 116




>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
          Length = 82

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 58  ttggtttgtgagcagggattggatcccgccttgcatcaactga 100
           |||| |||||||||||||| |||||| ||||| ||||||||||
Sbjct: 21  ttggcttgtgagcagggatcggatcctgccttccatcaactga 63




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 32  attggatcccgccttgcatcaactga 57




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactga 160




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
           trichocarpa
          Length = 155

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactga 136




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
           (castor bean)
          Length = 156

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactga 137




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 77  attggatcccgccttgcatcaactga 102




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 57  attggtttgtgagcagggattggatcccgccttgcatcaactga 100
           ||||| |||||| | | ||| |||||||||||||||||||||||
Sbjct: 74  attggcttgtgaccggcgatcggatcccgccttgcatcaactga 117




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  gatcccgccttgcatcaactga 100
           ||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactga 90




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  gatcccgccttgcatcaactga 100
           ||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactga 128