miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
           pekinensis
          Length = 115

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 104 tatgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||||
Sbjct: 81  tatgagaatcttgatgatgctgcat 105




>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
           cress)
          Length = 109

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 104 tatgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||||
Sbjct: 75  tatgagaatcttgatgatgctgcat 99




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
           cress)
          Length = 123

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 103 gtatgagaatcttgatgatgctgca 127
           |||||||||||||||||||||||||
Sbjct: 88  gtatgagaatcttgatgatgctgca 112




>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
           (castor bean)
          Length = 143

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 104 tatgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||||
Sbjct: 109 tatgagaatcttgatgatgctgcat 133




>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
           (papaya)
          Length = 173

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 140 atgagaatcttgatgatgctgcat 163




>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 83  atgagaatcttgatgatgctgcat 106




>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
          Length = 168

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 135 atgagaatcttgatgatgctgcat 158




>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
          Length = 112

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 79  atgagaatcttgatgatgctgcat 102




>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
          Length = 111

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 78  atgagaatcttgatgatgctgcat 101




>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
          Length = 148

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 115 atgagaatcttgatgatgctgcat 138




>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
           (sorghum)
          Length = 139

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 106 atgagaatcttgatgatgctgcat 129




>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 78  atgagaatcttgatgatgctgcat 101




>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
           (sorghum)
          Length = 122

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 89  atgagaatcttgatgatgctgcat 112




>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 105 atgagaatcttgatgatgctgcat 128
           ||||||||||||||||||||||||
Sbjct: 79  atgagaatcttgatgatgctgcat 102




>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
           (papaya)
          Length = 213

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 181 tgagaatcttgatgatgctgcat 203




>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
           cress)
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 97  tttttcgtatgagaatcttgatgatgctgca 127
           ||||| || ||||||||||||||||||||||
Sbjct: 72  tttttggtttgagaatcttgatgatgctgca 102




>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
           trichocarpa
          Length = 130

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 98  tgagaatcttgatgatgctgcat 120




>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
           trichocarpa
          Length = 141

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgcat 131




>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
           trichocarpa
          Length = 129

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 97  tgagaatcttgatgatgctgcat 119




>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
          Length = 162

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgcat 152




>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
           (castor bean)
          Length = 159

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 127 tgagaatcttgatgatgctgcat 149




>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
           (castor bean)
          Length = 160

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 128 tgagaatcttgatgatgctgcat 150




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 58  tgagaatcttgatgatgctgcat 80




>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
          Length = 161

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 129 tgagaatcttgatgatgctgcat 151




>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
          Length = 121

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 89  tgagaatcttgatgatgctgcat 111




>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
          Length = 120

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 88  tgagaatcttgatgatgctgcat 110




>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
           Group
          Length = 109

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tgagaatcttgatgatgctgcat 128
           |||||||||||||||||||||||
Sbjct: 77  tgagaatcttgatgatgctgcat 99




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 106 tgagaatcttgatgatgctgca 127
           ||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121




>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
          Length = 135

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 99  tttcgtatgagaatcttgatgatgctgcat 128
           |||| |||| ||||||||||||||||||||
Sbjct: 96  tttcatatgggaatcttgatgatgctgcat 125