miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 52 ctcgaagctatgtgtgctcactctctatctgtc 84
|||||||||||||||||||||||||||||||||
Sbjct: 52 ctcgaagctatgtgtgctcactctctatctgtc 84
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/84 (85%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggtct-tttcctgcatatatca---ttttatgctcga 56
||||||||||||||||||| |||||| |||| ||||||| | | ||| ||||| ||
Sbjct: 3 gacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgcttga 62
Query: 57 agctatgtgtgctcactctctatc 80
||||||||||||||||||||||||
Sbjct: 63 agctatgtgtgctcactctctatc 86
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 70/84 (83%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagct 60
||||||||||||||||||| |||||| |||||||| || | || |||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtactttcctgc----atgaattcatgctcgaagcc 58
Query: 61 atgtgtgctcactctctatctgtc 84
|| ||||| ||||||||||||||
Sbjct: 59 ttgcgtgcttactctctatctgtc 82
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 70/84 (83%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagct 60
||||||||||||||||||| |||||||| ||| ||||| || ||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggtctgttcttgcatgggtc----catgcttgaagct 58
Query: 61 atgtgtgctcactctctatctgtc 84
|| ||||||||||||||||||||
Sbjct: 59 ctgcgtgctcactctctatctgtc 82
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatgg 25
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacccatgg 27
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 48 tatgctcgaagctatgtgtgctcactctctatctgtc 84
|||||| ||| ||||||||||| ||||||||||||||
Sbjct: 57 tatgcttgaaactatgtgtgcttactctctatctgtc 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 4 agaagagagtgagcacccatggtcttttcctgcat 38
|||||||||||||||| |||||| ||||| |||||
Sbjct: 6 agaagagagtgagcacacatggtgttttcttgcat 40
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagct 60
||||||||||||||||||| ||||||||||| |||| || || ||||| ||||||
Sbjct: 3 gacagaagagagtgagcacatatggtcttttcaagcat-gatgtttacatgcttgaagct 61
Query: 61 atgtgtgctcac-tctctatctgtc 84
||| |||||||| ||||||||||||
Sbjct: 62 atgcgtgctcacttctctatctgtc 86
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 atgctcgaagctatgtgtgctcactctctatctgtc 84
||||| ||||||||||||||| ||||||| ||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtc 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggt 26
||||||||||||||||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggtcttttc 32
||||||||||||||||||| |||||| |||||
Sbjct: 3 gacagaagagagtgagcacacatggtgttttc 34
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 7e-05
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggt-cttttcctgcat 38
||||||||||||||||||| |||||| |||||| |||||
Sbjct: 3 gacagaagagagtgagcacacatggtgcttttcttgcat 41
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggt 26
||||||||||||||||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggt 26
||||||||||||||||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacccatggt 26
||||||||||||||||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
