miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 194 bits (98), Expect = 2e-49
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 1 gtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatacc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gtgacgagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatacc 71
Query: 61 gataattttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 72 gataattttcttgcaagttgtgcagttgttgtctcaagcttgctgc 117
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 131 bits (66), Expect = 2e-30
Identities = 93/102 (91%)
Strand = Plus / Plus
Query: 5 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgata 64
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 65 attttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgc 117
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 65 attttcttgcaagttgtgcagttgctgtctcaagcttgc 103
||||||||||||| | ||||||||||||||| |||||||
Sbjct: 53 attttcttgcaagatatgcagttgctgtctctagcttgc 15
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 105 bits (53), Expect = 1e-22
Identities = 92/104 (88%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 5 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccga 62
|||||||||||||||||||||||| |||||||||||| | |||||| | ||||||
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 63 taattttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgc 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 66 ttttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||| | ||||||||||| ||| ||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgc 12
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 55 cataccgataattttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
||||||||| || |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgc 118
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 5 caagctagaggcagcaactgcatatcttgcaagaa 39
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgc 228
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgc 156
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||| |||||||||||| ||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 162
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgc 154
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 73 gcaagttgtgcagttgctgtctcaagcttgctgc 106
||||||| ||||||||||| ||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgc 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 caagctagaggcagcaactgcatatcttgc 34
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 69 tcttgcaagttgtgcagttgctgtctcaagcttgctgc 106
||||||||||| ||||||||||| ||||||||| ||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgc 118
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 6 aagctagaggcagcaactgcatatcttgcaaga 38
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
