miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 60.0 bits (30), Expect = 4e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tagggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaa 59
|||||||||||||| |||||||||||| | ||||| ||| ||| | | ||||||||||
Sbjct: 11 tagggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaa 70
Query: 60 ggagagttgccctg 73
||||||||||||||
Sbjct: 71 ggagagttgccctg 84
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tcttgccaaaggagagttgccctg 73
||||||||||||||||||||||||
Sbjct: 60 tcttgccaaaggagagttgccctg 83
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 cttgccaaaggagagttgccctg 73
|||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagttgccctg 105
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 cttgccaaaggagagttgccctg 73
|||||||||||||||||||||||
Sbjct: 71 cttgccaaaggagagttgccctg 93
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tgccaaaggagagttgccctg 73
|||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctg 92
