miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
          alba
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 68 atgtgttctcaggtcgcccctg 89
          ||||||||||||||||||||||
Sbjct: 50 atgtgttctcaggtcgcccctg 71





>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
          trichocarpa
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 68 atgtgttctcaggtcgcccctg 89
          ||||||||||||||||||||||
Sbjct: 55 atgtgttctcaggtcgcccctg 76





>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 68  atgtgttctcaggtcgcccctg 89
           ||||||||||||||||||||||
Sbjct: 107 atgtgttctcaggtcgcccctg 128





>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
          (barrel medic)
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 68 atgtgttctcaggtcgcccctg 89
          ||||||||||||||||||||||
Sbjct: 66 atgtgttctcaggtcgcccctg 87





>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 68 atgtgttctcaggtcgcccctg 89
          ||||||||||||||||||||||
Sbjct: 59 atgtgttctcaggtcgcccctg 80