miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccactaactagatctttgattt 44
|||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 7 gggaatgttgtctggctcgaggtcactaattagatctatgattt 50
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 133 gttagtgacgtcggaccaggcttcattccc 162
||||||||||||||||||||||||||||||
Sbjct: 86 gttagtgacgtcggaccaggcttcattccc 115
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccactaactagatctttgat 42
|||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 7 gggaatgttgtctggctcgaggacaccaactagatctatgat 48
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 141 cgtcggaccaggcttcattccc 162
||||||||||||||||||||||
Sbjct: 129 cgtcggaccaggcttcattccc 150
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccactaactagatctttgatttaatctcagttgat 57
|||||||||||||||||||||| |||||| ||||| |||||| |||||| |||||
Sbjct: 7 gggaatgttgtctggctcgaggtcactaatgggatctatgattttatctcaattgat 63
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccactaactagatc 36
|||||||||||||||||||||| ||| |||||||||
Sbjct: 5 gggaatgttgtctggctcgaggtcaccaactagatc 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 132 agttagtgacgtcggaccaggcttcattccc 162
|||||||| |||||||||||||||||||||
Sbjct: 151 agttagtgttgtcggaccaggcttcattccc 181
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 132 agttagtgacgtcggaccaggcttcattccc 162
|||||||| ||||||||||||||||||||||
Sbjct: 100 agttagtgtcgtcggaccaggcttcattccc 130
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 133 gttagtgacgtcggaccaggcttcattccc 162
|||| |||||||||||||||||||||||||
Sbjct: 110 gttaatgacgtcggaccaggcttcattccc 139
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 138 tgacgtcggaccaggcttcattccc 162
|||||||||||||||||||||||||
Sbjct: 92 tgacgtcggaccaggcttcattccc 116
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 134 ttagtgacgtcggaccaggcttcattccc 162
|||||| ||||||||||||||||||||||
Sbjct: 88 ttagtgtcgtcggaccaggcttcattccc 116
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccactaactagatc 36
|||||||||||||||||||||| ||| || ||||||
Sbjct: 7 gggaatgttgtctggctcgaggtcaccaattagatc 42
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 133 gttagtgacgtcggaccaggcttcattccc 162
||||||| |||||||||||||||||||||
Sbjct: 113 gttagtgttgtcggaccaggcttcattccc 142
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 agtgacgtcggaccaggcttcattccc 162
|||| ||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattccc 127
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccact 27
|||||||||||||||||||||| ||||
Sbjct: 7 gggaatgttgtctggctcgaggacact 33
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 141 cgtcggaccaggcttcattccc 162
||||||||||||||||||||||
Sbjct: 123 cgtcggaccaggcttcattccc 144
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
trichocarpa
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 141 cgtcggaccaggcttcattccc 162
||||||||||||||||||||||
Sbjct: 98 cgtcggaccaggcttcattccc 119
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgaggccac 26
|||| |||||||||||||||||||||
Sbjct: 7 gggattgttgtctggctcgaggccac 32
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 133 gttagtgacgtcggaccaggcttcattccc 162
||||||| | ||||||||||||||||||||
Sbjct: 115 gttagtgccctcggaccaggcttcattccc 144
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gtgacgtcggaccaggcttcattccc 162
||||| ||||||||||||||||||||
Sbjct: 110 gtgacctcggaccaggcttcattccc 135
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gtgacgtcggaccaggcttcattccc 162
||||| ||||||||||||||||||||
Sbjct: 111 gtgacctcggaccaggcttcattccc 136
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gggaatgttgtctggctcgagg 22
||||||||||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgagg 28
