miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 333 bits (168), Expect = 5e-91
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 132
Query: 121 gagcttcattaccttgtattagatccttgtttggattgaagggagctc 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gagcttcattaccttgtattagatccttgtttggattgaagggagctc 180
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 119 bits (60), Expect = 1e-26
Identities = 144/169 (85%), Gaps = 6/169 (3%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||| | || || ||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 61 cccacagccctataagca-gagattataattttggataggcttgtggcttgcatatctca 119
||||||||||||| | || || | ||||| ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcatatctca 115
Query: 120 ggagcttcattaccttgtattagatccttgtttggattgaagggagctc 168
||||||| ||||||| | ||||||| || |||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctc 164
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 113 bits (57), Expect = 8e-25
Identities = 143/169 (84%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 120
||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 73 cccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatatctcag 132
Query: 121 gagcttcatta-ccttgtattagatccttgtttggattgaagggagctc 168
||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct: 133 gagctgcattatccaagt-ttagatccttgtttggattgaagggagctc 180
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 111 bits (56), Expect = 3e-24
Identities = 140/168 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 120
||||||||||| | || || | || ||| |||||||| || |||||||||||||
Sbjct: 73 tccacagccctacccgaagttatactttttctgggtaggcttgcggtttgcatatctcag 132
Query: 121 gagcttcattaccttgtattagatccttgtttggattgaagggagctc 168
||||| ||||||| | | ||||||||||||||||||||||||||
Sbjct: 133 gagctgcattaccctaagcttaatccttgtttggattgaagggagctc 180
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 91.7 bits (46), Expect = 3e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 cc 62
||
Sbjct: 73 cc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 60
|||||||||||||||||| ||| ||||| || |||||||||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 cccacagccctat 73
|| |||||||||
Sbjct: 73 tcctcagccctat 85
