miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 79.8 bits (40), Expect = 5e-15
Identities = 77/87 (88%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcct--gaatttggctgtggaagaacacaaagcaa 58
||||||||||||||||||||||||||||| |||||||| |||| || | |||| | ||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcacagaacat 62
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 73.8 bits (37), Expect = 3e-13
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaaga 60
|||| ||||||||||||||||||||||||||| ||| |||| || || || | |||||
Sbjct: 4 tggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaaga 61
Query: 61 atcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||
Sbjct: 62 atcggtcgataaacctctgcatcca 86
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 aaagcaagaatcggtcgataaacctctgcatcca 85
|||||| |||| | ||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatcca 86
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 aaagcaagaatcggtcgataaacctctgcatcca 85
||||||||||||| ||||||||||||||||||||
Sbjct: 56 aaagcaagaatcgatcgataaacctctgcatcca 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatcca 94
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaa 32
||||||||||||||||||||||| ||||||||
Sbjct: 4 tggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaattt 35
|||| |||||||||||||||||| |||||||||||
Sbjct: 4 tggatgcagcggttcatcgatctgttcctgaattt 38
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatcca 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatcca 131
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcca 130
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatcca 156
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatcca 157
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctctt 26
|||||||||||||| |||||||||||
Sbjct: 4 tggaggcagcggttgatcgatctctt 29
