miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 109 bits (55), Expect = 6e-24
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
||||||||||||||||||||||||||||||||||| || || ||| |||||||||||
Sbjct: 11 gatgttggtgaggttcaatccgaagacggatttac--atgtatagagttgtaaaatacga 68
Query: 61 tctcagattgagccgcgccaatatca 86
||||||||||||||||||||||||||
Sbjct: 69 tctcagattgagccgcgccaatatca 94
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 89.7 bits (45), Expect = 5e-18
Identities = 76/86 (88%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
||||||||||||||||||||||||||||||||||| |||| || ||||| ||||
Sbjct: 11 gatgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaaggacga 66
Query: 61 tctcagattgagccgcgccaatatca 86
||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatca 92
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 85.7 bits (43), Expect = 8e-17
Identities = 75/86 (87%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
|||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 11 gatgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaacga 64
Query: 61 tctcagattgagccgcgccaatatca 86
|||| |||||||||||||||||||||
Sbjct: 65 tctctgattgagccgcgccaatatca 90
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/86 (87%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
|||||||||||||||||||||||||||| ||||| | | ||| ||||||| ||||
Sbjct: 11 gatgttggtgaggttcaatccgaagacgaatttatgctt--attt--tcgtaaagaacga 66
Query: 61 tctcagattgagccgcgccaatatca 86
||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatca 92
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 gtaaaatacgatctcagattgagccgcgccaatatca 86
||||||| |||||||||||||||||||||||||||||
Sbjct: 49 gtaaaatccgatctcagattgagccgcgccaatatca 85
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 gatctcagattgagccgcgccaatatca 86
||||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatca 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaaga 26
|||||||||||||||||||| |||||
Sbjct: 11 gatgttggtgaggttcaatctgaaga 36
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gatgttggtgaggttcaatccgaagacggatttac 35
|||||||||||||||||||| |||||| |||||||
Sbjct: 11 gatgttggtgaggttcaatctgaagacagatttac 45
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 cgatctcagattgagccgcgccaatatca 86
|||||||||| ||||||||||||||||||
Sbjct: 65 cgatctcagaatgagccgcgccaatatca 93
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 ctcagattgagccgcgccaatatca 86
|||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatca 87
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 tcagattgagccgcgccaatatca 86
||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatca 86
