miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
          (castor bean)
          Length = 98

 Score = 95.6 bits (48), Expect = 8e-20
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  gatgttggaacggctcaatcaaatcaaatctccc-aagaattgggtcctttagtttgatt 60
          |||||||||| ||||||||||||||||||||||| |||  |||||||||||| | |||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctgatt 70

                          
Query: 61 gagccgtgccaatatc 76
          ||||||||||||||||
Sbjct: 71 gagccgtgccaatatc 86




>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
          Length = 99

 Score = 93.7 bits (47), Expect = 3e-19
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 2  gatgttggaacggctcaatcaaatcaaatctcccaa--gaattgggtcctttagtttgat 59
          |||||||||| |||||||||||||||||||||||||  |  |||||||||||| | ||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 70

                            
Query: 60 tgagccgtgccaatatca 77
          ||||||||||||||||||
Sbjct: 71 tgagccgtgccaatatca 88




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
          (papaya)
          Length = 104

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 70/83 (84%), Gaps = 7/83 (8%)
 Strand = Plus / Plus

                                                                      
Query: 2  gatgttggaacggctcaatcaaatcaaatctcccaag-------aattgggtcctttagt 54
          |||||||||| |||||||||||||||||||||| |||         ||||||| |||| |
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtcttttaat 70

                                 
Query: 55 ttgattgagccgtgccaatatca 77
          |||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatca 93




>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
          Length = 97

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgatgttggaacggctcaatcaaatcaaatctcccaagaattgggtcctttagtttgatt 60
          ||||||||| |||||||||||||| ||||  || |||   ||| |||||||| | |||||
Sbjct: 10 tgatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgatt 69

                           
Query: 61 gagccgtgccaatatca 77
          |||||||||||||||||
Sbjct: 70 gagccgtgccaatatca 86




>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
          Length = 102

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 48 ctttagtttgattgagccgtgccaatatca 77
          ||||||| ||||||||||||||||||||||
Sbjct: 62 ctttagtctgattgagccgtgccaatatca 91




>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
           (papaya)
          Length = 113

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 49  tttagtttgattgagccgtgccaatatca 77
           |||||| ||||||||||||||||||||||
Sbjct: 76  tttagtctgattgagccgtgccaatatca 104




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
          (papaya)
          Length = 99

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtttgattgagccgtgccaatatca 77
          |||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatca 88




>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
          Length = 85

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 41 ttgggtcctttagtttgattgagccgtgccaatatca 77
          ||||||| |||| | ||||||||||||||||||||||
Sbjct: 48 ttgggtcttttaatctgattgagccgtgccaatatca 84




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtttgattgagccgtgccaatatca 77
          |||||||||||||||||||||||||
Sbjct: 57 gtttgattgagccgtgccaatatca 81




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
          (castor bean)
          Length = 99

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtttgattgagccgtgccaatatca 77
          |||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatca 88




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gtttgattgagccgtgccaatatca 77
          |||||||||||||||||||||||||
Sbjct: 63 gtttgattgagccgtgccaatatca 87




>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 53  gtttgattgagccgtgccaatatca 77
           |||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatca 133




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
          (papaya)
          Length = 100

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
          (thale cress)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90




>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgatgttggaacggctcaatcaaatcaaatctcccaagaattgggtcctttagtttgatt 60
          ||||||||| |  |||||||||||||||| | | |||   |||||| ||||  | |||||
Sbjct: 1  tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 60

                          
Query: 61 gagccgtgccaatatc 76
          ||||||||||||||||
Sbjct: 61 gagccgtgccaatatc 76




>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
          (castor bean)
          Length = 100

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89




>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 53  gtttgattgagccgtgccaatatc 76
           ||||||||||||||||||||||||
Sbjct: 82  gtttgattgagccgtgccaatatc 105




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
          truncatula (barrel medic)
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatca 93




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 53  gtttgattgagccgtgccaatatc 76
           ||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
          Length = 114

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 53  gtttgattgagccgtgccaatatc 76
           ||||||||||||||||||||||||
Sbjct: 79  gtttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
          bicolor (sorghum)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
          Japonica Group
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 tttgattgagccgtgccaatatca 77
          ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90




>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
           (papaya)
          Length = 143

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131




>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 88  tttgattgagccgtgccaatatc 110




>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126




>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 91  tttgattgagccgtgccaatatc 113




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 80  tttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
          Length = 118

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tttgattgagccgtgccaatatc 76
           |||||||||||||||||||||||
Sbjct: 84  tttgattgagccgtgccaatatc 106




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 55  ttgattgagccgtgccaatatca 77
           |||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatca 123




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 55  ttgattgagccgtgccaatatca 77
           |||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatca 124




>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 54  tttgattgagccgtgccaatat 75
           ||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatat 104




>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
          Length = 112

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tgattgagccgtgccaatatca 77
           ||||||||||||||||||||||
Sbjct: 80  tgattgagccgtgccaatatca 101




>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
           (sorghum)
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tgattgagccgtgccaatatca 77
           ||||||||||||||||||||||
Sbjct: 83  tgattgagccgtgccaatatca 104




>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
           Japonica Group
          Length = 129

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tgattgagccgtgccaatatca 77
           ||||||||||||||||||||||
Sbjct: 97  tgattgagccgtgccaatatca 118




>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
          (thale cress)
          Length = 102

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 57 gattgagccgtgccaatatca 77
          |||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91




>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
           trichocarpa
          Length = 133

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121




>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
          (castor bean)
          Length = 101

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 56 tgattgagccgtgccaatatc 76
          |||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89




>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
          Length = 104

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 56 tgattgagccgtgccaatatc 76
          |||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92




>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
          Length = 104

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 56 tgattgagccgtgccaatatc 76
          |||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92




>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
          (sorghum)
          Length = 111

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 56 tgattgagccgtgccaatatc 76
          |||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99




>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
           (sorghum)
          Length = 137

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125




>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
           Indica Group
          Length = 137

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125




>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
          Length = 136

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 104 tgattgagccgtgccaatatc 124




>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatatc 109




>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
           Japonica Group
          Length = 121

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgattgagccgtgccaatatc 76
           |||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatatc 109