miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactttc 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactttc 33




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 130 aaagttcaagaaagttgtggga 151
           ||||||||||||||||||||||
Sbjct: 229 aaagttcaagaaagttgtggga 250




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttt 32