miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 27  agcgaattggatcccgccttgcatcaactga 57




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 130 agcgaattggatcccgccttgcatcaactga 160



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggaact 23
          |||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
           trichocarpa
          Length = 155

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactga 136



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  tcgcttggtgcaggtcgggaactgattagctt 32
          ||||||||||||||||||||||||||| ||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctt 50



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactga 137




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 75  gaattggatcccgccttgcatcaactga 102



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactga 118




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 116 ggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||
Sbjct: 95  ggatcccgccttgcatcaactga 117




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 117 gatcccgccttgcatcaactga 138
           ||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactga 90




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactga 118



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggaact 23
          |||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 94  attggatcccgccttgcatcaactga 119



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactga 116



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 97  attggatcccgccttgcatcaactga 122



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||| ||||||||||||||||||||
Sbjct: 90  attggctcccgccttgcatcaactga 115




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
          subsp. pekinensis
          Length = 137

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 113 attggatcccgccttgcatcaa 134
           ||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaa 112




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 117 gatcccgccttgcatcaactga 138
           ||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactga 128