miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
          Length = 126

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 89  ttgttgcggttcaataaagctgtggga 115
           |||||||||||||||||||||||||||
Sbjct: 89  ttgttgcggttcaataaagctgtggga 115



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
          Length = 119

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  gttgcggttcaataaagctgtggga 115
           |||||||||||||||||||||||||
Sbjct: 84  gttgcggttcaataaagctgtggga 108



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
           (papaya)
          Length = 101

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  ttgcggttcaataaagctgtggga 115
           ||||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtggga 90



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
          (thale cress)
          Length = 152

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacagctttcttgaactgcaa 24
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcaa 34



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  ttgcggttcaataaagctgtggga 115
           ||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtggga 141




>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis (castor
           bean)
          Length = 166

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  ttgcggttcaataaagctgtggga 115
           ||||||||||||||||||||||||
Sbjct: 132 ttgcggttcaataaagctgtggga 155



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  ttgcggttcaataaagctgtggga 115
           ||||||||||||||||||||||||
Sbjct: 72  ttgcggttcaataaagctgtggga 95



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  ttgcggttcaataaagctgtggga 115
           ||||||||||||||||||||||||
Sbjct: 66  ttgcggttcaataaagctgtggga 89



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
          trichocarpa
          Length = 135

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 93  tgcggttcaataaagctgtggga 115
           |||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtggga 124




>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
          (sorghum)
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
          Japonica Group
          Length = 155

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33