miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 135 bits (68), Expect = 9e-32
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccg-agcatcgctggcctccgtggat 62
Query: 61 ggcgtatgaggagccatgca 80
||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgca 82
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 135 bits (68), Expect = 9e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtggat 63
Query: 61 ggcgtatgaggagccatgca 80
||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgca 83
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 135 bits (68), Expect = 9e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63
Query: 61 ggcgtatgaggagccatgca 80
||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgca 83
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 103 bits (52), Expect = 3e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
|||||||||||||||||||||| ||| ||||||| || || ||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcg-agtatcgatgacctccgtggat 62
Query: 61 ggcgtatgaggagccatgca 80
||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgca 82
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
||||||||||||||||||||||||| ||||| || || | |||| ||| ||| |||||
Sbjct: 4 tgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttggat 63
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 64 ggcgtatgaggagcca 79
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
||||||||||||||||||||||||||| || ||||| ||| || | | |||| || ||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcggat 63
Query: 61 ggcgtatgaggagccatgca 80
||||| |||||||||||||
Sbjct: 64 ggcgtgcgaggagccatgca 83
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccg 37
||||||||||||||||||||||||||| ||| |||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagctcaccg 40
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagag 30
||||||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 60
|||||||||||||| |||||||||||| ||| || | || | ||| |||||| ||||||
Sbjct: 4 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 63
Query: 61 ggcgt 65
|||||
Sbjct: 64 ggcgt 68
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttg 25
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgca 27
|||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatctgca 30
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtggatggcgtatgaggagcca 76
||||||||||||||||||||||
Sbjct: 58 gtggatggcgtatgaggagcca 79
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
