miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 325 bits (164), Expect = 1e-88
Identities = 173/176 (98%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgga 60
||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 ttcctcagccctatctatttatgatttcaaacatatagataggtttgtgggtttgcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ttcctcagccctatctatttatgatttcaaacatatagataggtttgtgggtttgcatat 131
Query: 121 gtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctct 187
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
|||||||| |||||||||||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 104 ttgcatatctcaggagctttatt--acctaatgttagatctttttttggattgaagggag 161
Query: 173 ctct 176
||||
Sbjct: 162 ctct 165
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 38 aaattgagctgctgacctatggattcctcagccctatctattt 80
||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 49 aaattgagctgctgatctatggatccctcaatcctatctattt 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 96 tagataggtttgtgggtttgcatatgtcaggagct 130
||||||||||||||| ||||||||| |||||||||
Sbjct: 104 tagataggtttgtgg-tttgcatatatcaggagct 137
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 54.0 bits (27), Expect = 7e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgga 60
||||||||||||||||||| | | ||| || || || |||||||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 ttcctcagccctatc 75
| || ||||||||||
Sbjct: 72 tcccacagccctatc 86
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 40 attgagctgctgacctatggattcctcagccctat 74
||||||||||||| |||||||| || |||||||||
Sbjct: 51 attgagctgctgagctatggatcccacagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 40 attgagctgctgacctatggattcctcagcccta 73
|||||||||| || ||||||||||| ||||||||
Sbjct: 51 attgagctgccgagctatggattccacagcccta 84
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 tttttggattgaagggagctct 176
||||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctct 173
