miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 301 bits (152), Expect = 2e-81
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 4 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Query: 64 acagccctatctatcaactgaaggataggtttgcggcttgcatatctcaggagctttatt 123
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 acagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcaggagctttatt 134
Query: 124 gcctaatgttagatccctttttggattgaagggagctcta 163
||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gcctaatgttagatccctttttggattgaagggagctcta 174
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 111 bits (56), Expect = 3e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 95 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 154
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaag 157
Query: 155 ggagctct 162
||||||||
Sbjct: 158 ggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 140/168 (83%), Gaps = 8/168 (4%)
Strand = Plus / Plus
Query: 4 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat-c 62
|||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||| |
Sbjct: 15 gctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggatcc 74
Query: 63 cacagccctat------ctatca-actgaaggataggtttgcggcttgcatatctcagga 115
||||||||||| || | | | ||||||| ||| ||||||||||||||||||
Sbjct: 75 cacagccctataagcagagattataattttggataggcttgtggcttgcatatctcagga 134
Query: 116 gctttattgcctaatgttagatccctttttggattgaagggagctcta 163
|||| ||| ||| | |||||||| | |||||||||||||||||||||
Sbjct: 135 gcttcattaccttgtattagatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat-c 62
|||||||||||||||||||||| |||| ||||||||||| ||||||| | ||||||| |
Sbjct: 15 gctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggatcc 74
Query: 63 cacagccctatc 74
||||||||||||
Sbjct: 75 cacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga-tc 62
|||||||||||||||||||||| | |||| |||| |||| |||||| ||||||||| ||
Sbjct: 15 gctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggattc 74
Query: 63 cacagcccta 72
||||||||||
Sbjct: 75 cacagcccta 84
Score = 48.1 bits (24), Expect = 4e-05
Identities = 65/76 (85%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 89 taggtttgcggcttgcatatctcaggagctttatt-gcctaatgttagatccctttttgg 147
|||| |||||| |||||||||||||||||| ||| ||||| ||| |||| | |||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166
Query: 148 attgaagggagctcta 163
||||||||||||||||
Sbjct: 167 attgaagggagctcta 182
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 4 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga-tc 62
|||||||||||||||| ||| | ||| | || |||||| ||||||| | ||||||| ||
Sbjct: 15 gctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggattc 74
Query: 63 cacagccctatctat 77
| |||||||||||||
Sbjct: 75 ctcagccctatctat 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 141 tttttggattgaagggagctcta 163
|||||||||||||||||||||||
Sbjct: 166 tttttggattgaagggagctcta 188
