miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 75.8 bits (38), Expect = 8e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ctgttgtggctccactcatgcactgcctcttccctggc 104




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 51  tgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| |||||||||||||||||||||||||
Sbjct: 82  tgttgtggctctactcatgcactgcctcttccctggc 118




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| | ||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggc 138




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggacgaggtagagcatggatggagttcccaacagaaca--gtcaagctgttgtggctcc 62
           |||||||||||| |||||||||||  |   ||||||| |  || |||||||| | |||| 
Sbjct: 23  gggacgaggtagtgcatggatggaactattaacagaagaatgttaagctgtttttgctct 82

                                    
Query: 63  actcatgcactgcctcttccctggc 87
           || ||||||||||||||||||||||
Sbjct: 83  acccatgcactgcctcttccctggc 107




>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 51  tgttgtggctccactcatgcactgcctcttccctggc 87
           |||| |||||| || ||||||||||||||||||||||
Sbjct: 64  tgttttggctctacccatgcactgcctcttccctggc 100




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  catgcactgcctcttccctggc 87
           ||||||||||||||||||||||
Sbjct: 86  catgcactgcctcttccctggc 107




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||| |||||| || | ||||||||||||||||||||
Sbjct: 64  ctgttttggctctacccctgcactgcctcttccctggc 101