miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 200 bits (101), Expect = 3e-51
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 1 ggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatac 70
Query: 61 cgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 71 cgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 118
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 135 bits (68), Expect = 1e-31
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgata 65
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 66 attttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 118
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 109 bits (55), Expect = 7e-24
Identities = 93/105 (88%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccga 63
|||||||||||||||||||||||| |||||||||||| | |||||| | ||||||
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 64 taattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 67.9 bits (34), Expect = 3e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 67.9 bits (34), Expect = 3e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 157
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 67.9 bits (34), Expect = 3e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 155
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 60.0 bits (30), Expect = 6e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 56 cataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || |||||||| ||| |||||||| || |||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcc 119
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaa 40
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 52.0 bits (26), Expect = 2e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || ||||||||| || |||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 163
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 7 aagctagaggcagcaactgcatatcttgcaaga 39
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 70 tcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||| | | ||||||||||||||| |||||||||||
Sbjct: 49 tcttgcatgctatgcagttgttgtctcgagcttgctgcc 11
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgc 35
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
