miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcca 75
Query: 61 tcctgagtt 69
|||||||||
Sbjct: 76 tcctgagtt 84
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 36 tcttgatcttcatttgcgctatccatcctgagtt 69
||||||||||| |||||||||||||||||||||
Sbjct: 56 tcttgatcttctcttgcgctatccatcctgagtt 89
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatggc 25
|||||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatggc 40
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatgg 24
||||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatgg 39
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 ttgatcttcatttgcgctatccatcctgagtt 69
||||||||| |||||||||||||||||||||
Sbjct: 72 ttgatcttctcttgcgctatccatcctgagtt 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccat 22
||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccat 37
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccatg 23
|||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgccat 22
||||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgccat 37
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agctcaggagggatagcgcca 21
|||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgcca 36
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 ttgcgctatccatcctgagtt 69
|||||||||||||||||||||
Sbjct: 90 ttgcgctatccatcctgagtt 110
