miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 97.6 bits (49), Expect = 2e-20
Identities = 87/99 (87%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatgatgaacgatcgagag---gt 57
|||||||||||||||||||||||||||| ||||||||||| |||| | | ||| ||
Sbjct: 3 gacagaagagagtgagcacacatggtgcttttcttgcatggtgaattaatgggagagagt 62
Query: 58 tcatgctcgaagctatgcgtgctcacttctctctctgtc 96
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 63 tcatgcttgaagctatgtgtgctcacttctctctctgtc 101
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 82/96 (85%), Gaps = 7/96 (7%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatgatgaacgatcgagaggttca 60
||||||||||||||||||||||||||| |||||||||||| |||| | | |||
Sbjct: 3 gacagaagagagtgagcacacatggtgactttcttgcatgctgaatg-------gactca 55
Query: 61 tgctcgaagctatgcgtgctcacttctctctctgtc 96
|||| ||||||||| |||||||||||||||||||||
Sbjct: 56 tgcttgaagctatgtgtgctcacttctctctctgtc 91
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcat 39
||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtggctttcttgcat 41
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 60.0 bits (30), Expect = 5e-09
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgca 38
||||||||||||||||||||||||||| ||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtg-ctttcttgca 39
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 59 catgctcgaagctatgcgtgctcacttctctctctgtc 96
|||||| |||||||||||||||||||||||| ||||||
Sbjct: 49 catgcttgaagctatgcgtgctcacttctctatctgtc 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
|||||||||||||||||||| |||||
Sbjct: 3 gacagaagagagtgagcacatatggt 28
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 56.0 bits (28), Expect = 8e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatg 40
||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtg-gtttcttgcatg 41
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 56.0 bits (28), Expect = 8e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 4 agaagagagtgagcacacatggtgcctttcttgcatgatg 43
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 6 agaagagagtgagcacacatggtg-ttttcttgcatgatg 44
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtg 27
|||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatgg 25
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatga 41
|||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3 gacagaagagagtgagcacacagggt-actttcttgcatga 42
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatga 41
|||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 3 gacagaggagagtgagcactcatggttcttttcttgcatga 43
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 68 agctatgcgtgctcacttctctctctgtc 96
||||| |||||||||||||||||||||||
Sbjct: 61 agctacgcgtgctcacttctctctctgtc 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||| ||||
Sbjct: 3 gacagaagagagtgagcacacgtggt 28
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgcctttcttgcatg 40
||||||||||||||||||| ||||| | |||||||||||
Sbjct: 3 gacagaagagagtgagcacccatggcgtttttcttgcatg 42
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 59 catgctcgaagctatgcgtgctcacttctctctctgtc 96
||||||||||||| ||||||||| | ||||||||||||
Sbjct: 50 catgctcgaagctctgcgtgctctc-tctctctctgtc 86
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 tgcgtgctcacttctctctctgtc 96
||||||||||||||||||||||||
Sbjct: 94 tgcgtgctcacttctctctctgtc 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa Japonica
Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 tgcgtgctcacttctctctctgtc 96
||||||||||||||||||||||||
Sbjct: 87 tgcgtgctcacttctctctctgtc 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 tgcgtgctcacttctctctctgtc 96
||||||||||||||||||||||||
Sbjct: 89 tgcgtgctcacttctctctctgtc 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgc 28
|||||||||||||||||||||| |||||
Sbjct: 3 gacagaagagagtgagcacacacggtgc 30
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtg 27
|||||||||||||||||||||| ||||
Sbjct: 3 gacagaagagagtgagcacacacggtg 29
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
