miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 69.9 bits (35), Expect = 5e-12
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagc 60
|||||||||||||||||||| |||||| |||| || ||| ||| || ||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtactttcgtg--tatgatgtttcattctcgaagc 59
Query: 61 tatgtgtgctcactctctatctgtca 86
||||||||||||||||||||||||||
Sbjct: 60 tatgtgtgctcactctctatctgtca 85
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtct-tttcctgcatatatca---ttttatgctcg 56
|||||||||||||||||||| |||||| |||| ||||||| | | ||| ||||| |
Sbjct: 2 tgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgcttg 61
Query: 57 aagctatgtgtgctcactctctatctgtca 86
||||||||||||||||||||||||| ||||
Sbjct: 62 aagctatgtgtgctcactctctatccgtca 91
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/86 (83%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagc 60
|||||||||||||||||||| |||||| |||||||| || | || |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtactttcctgc----atgaattcatgctcgaagc 57
Query: 61 tatgtgtgctcactctctatctgtca 86
|| ||||| |||||||||||||||
Sbjct: 58 cttgcgtgcttactctctatctgtca 83
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/86 (83%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagc 60
|||||||||||||||||||| |||||||| ||| ||||| || ||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacatggtctgttcttgcatgggtc----catgcttgaagc 57
Query: 61 tatgtgtgctcactctctatctgtca 86
| || |||||||||||||||||||||
Sbjct: 58 tctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaagc 60
|||||||||||||||||||| ||||||||||| |||| || || ||||| |||||
Sbjct: 2 tgacagaagagagtgagcacatatggtcttttcaagcat-gatgtttacatgcttgaagc 60
Query: 61 tatgtgtgctcac-tctctatctgtca 86
|||| |||||||| |||||||||||||
Sbjct: 61 tatgcgtgctcacttctctatctgtca 87
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatgg 26
||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacccatgg 27
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 49 tatgctcgaagctatgtgtgctcactctctatctgtca 86
|||||| ||| ||||||||||| |||||||||||||||
Sbjct: 57 tatgcttgaaactatgtgtgcttactctctatctgtca 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 5 agaagagagtgagcacccatggtcttttcctgcat 39
|||||||||||||||| |||||| ||||| |||||
Sbjct: 6 agaagagagtgagcacacatggtgttttcttgcat 40
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 atgctcgaagctatgtgtgctcactctctatctgtca 86
||||| ||||||||||||||| ||||||| |||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtca 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggt 27
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggtcttttc 33
|||||||||||||||||||| |||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgttttc 34
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggt-cttttcctgcat 39
|||||||||||||||||||| |||||| |||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcat 41
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 50 atgctcgaagctatgtgtgctcac-tctctatctgtca 86
||||| |||||||||||||||||| ||||| |||||||
Sbjct: 65 atgcttgaagctatgtgtgctcacttctctctctgtca 102
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggt 27
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggt 27
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacccatggt 27
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 50 atgctcgaagctatgtgtgctcac-tctctatctgtca 86
||||| |||||||||||||||||| ||||| |||||||
Sbjct: 55 atgcttgaagctatgtgtgctcacttctctctctgtca 92
