miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacgtagagacc 33
|||||||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacacgtagagacc 36
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 60.0 bits (30), Expect = 4e-09
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacgtagagacccatc---tgtttatgatcggctactgc 57
||||||||||||||||||||||| | | ||||| ||| ||||| ||| |||| |||
Sbjct: 4 tgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgttgc 63
Query: 58 gggtggcgtgcgaggagccaagca 81
|||||||||||||||||||||||
Sbjct: 64 cggtggcgtgcgaggagccaagca 87
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ctactgcgggtggcgtgcgaggagccaagca 81
||||||||| |||||||||||||||||||||
Sbjct: 73 ctactgcggatggcgtgcgaggagccaagca 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ctactgcgggtggcgtgcgaggagccaagca 81
||||||||| |||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagca 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 ctactgcgggtggcgtgcgaggagccaagca 81
|||| ||||||||||||||||||||||||||
Sbjct: 57 ctacggcgggtggcgtgcgaggagccaagca 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacgtaga 29
||||||||||||||||||||||| |||||
Sbjct: 4 tgcctggctccctgtatgccacaagtaga 32
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 49 ggctactgcgggtggcgtgcgaggagccaagca 81
|||| |||| |||||||||||||||||||||||
Sbjct: 55 ggctgctgccggtggcgtgcgaggagccaagca 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 3 tgcctggctccctgtatgccaca 25
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 49 ggctactgcgggtggcgtgcgaggagccaagca 81
||||| ||| |||||||||||||||||||||||
Sbjct: 55 ggctattgccggtggcgtgcgaggagccaagca 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacgtagagacccatctgtttatgatcggctactgcggg 60
|||||||||||||||||||||||| | || ||| |||| | |||| || |||| |||
Sbjct: 4 tgcctggctccctgtatgccacacatggacaccaatctttgggtgattggtgactgtggg 63
Query: 61 tggcgtgcgaggagccaagca 81
||| |||| ||||||||||||
Sbjct: 64 tggtgtgcaaggagccaagca 84
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacac 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacac 27
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacac 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacac 27
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacac 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacac 27
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacac 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacac 27
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 ggtggcgtgcgaggagccaagca 81
|||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagca 85
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 actgcgggtggcgtgcgaggagccaa 78
||||||| ||||||||||||||||||
Sbjct: 72 actgcggatggcgtgcgaggagccaa 97
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
