miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 180 bits (91), Expect = 4e-45
Identities = 157/177 (88%), Gaps = 9/177 (5%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 cccacagccctatctcataataaagactctagtcttcttggataggcttgtggcttgcat 120
||||||||||||| | | ||| | || | |||||||||||||||||||||||
Sbjct: 73 cccacagccctat----aagcagagattata---attttggataggcttgtggcttgcat 125
Query: 121 atctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctc 177
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 126 atctcaggagcttcattac--cttgtattagatccttgtttggattgaagggagctc 180
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 121 bits (61), Expect = 3e-27
Identities = 151/178 (84%), Gaps = 11/178 (6%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 cccacagccctatctcat-aataaagactctagtcttcttggataggcttgtggcttgca 119
|||||||||||||| | | ||| | | | ||||||||||||||||||||||
Sbjct: 73 cccacagccctatcccgtcaatgggg------ggc--attggataggcttgtggcttgca 124
Query: 120 tatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctc 177
||||||||||||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct: 125 tatctcaggagctgcatta--tccaagtttagatccttgtttggattgaagggagctc 180
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||| | || |||||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 61 cccacagccctatc 74
||||||||||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 8e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 cccacagcccta 72
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 101 bits (51), Expect = 3e-21
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 cccacagccctatct 75
|||||| |||||||
Sbjct: 73 -ccacagtcctatct 86
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 77.8 bits (39), Expect = 5e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 60
|||||||||||||||||| ||| ||||| | || |||||||||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 cccacagccctatct 75
|| |||||||||||
Sbjct: 73 tcctcagccctatct 87
