miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaagacgtttttt 33
||||||||||||| | |||||||||||||||||
Sbjct: 88 actccctccgtcccataatgtaagacgtttttt 56
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaagacgtttttt 33
||||||||||||| | |||||||||||||||||
Sbjct: 6 actccctccgtcccataatgtaagacgtttttt 38
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaagacgtttttt 33
||||||||||||| | |||||| ||||||||||
Sbjct: 106 actccctccgtcccataatgtaggacgtttttt 74
>RF00906;MIR1122;AP008217.1/6570444-6570554 39947:Oryza sativa
Japonica Group
Length = 111
Score = 50.1 bits (25), Expect = 2e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaaga 25
|||||||||||||||||||||||||
Sbjct: 6 actccctccgtcctaaaatgtaaga 30
>RF00906;MIR1122;AP008209.1/35984076-35984203 39947:Oryza sativa
Japonica Group
Length = 128
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaag 24
||||||||||||||||||||||||
Sbjct: 6 actccctccgtcctaaaatgtaag 29
>RF00906;MIR1122;AAAA02011454.1/9285-9412 39946:Oryza sativa Indica
Group
Length = 128
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaag 24
||||||||||||||||||||||||
Sbjct: 123 actccctccgtcctaaaatgtaag 100
>RF00906;MIR1122;AL845346.4/42836-42971 4530:Oryza sativa (rice)
Length = 136
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaag 24
||||||||||||||||||||||||
Sbjct: 6 actccctccgtcctaaaatgtaag 29
>RF00906;MIR1122;AC161407.5/87285-87421 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 110 ttacattttgggacggagggagt 132
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 110 ttacattttgggacggagggagt 132
>RF00906;MIR1122;AAAA02033663.1/22175-22286 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
>RF00906;MIR1122;AP008215.1/20036672-20036557 39947:Oryza sativa
Japonica Group
Length = 116
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaagacgtttt 31
||||||||||||||||||| ||||| |||||
Sbjct: 6 actccctccgtcctaaaatataagaagtttt 36
>RF00906;MIR1122;AACV01018440.1/8398-8301 39947:Oryza sativa
Japonica Group
Length = 98
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 71 ttacattttgggacggagggagt 93
>RF00906;MIR1122;AP005510.3/22168-22263 39947:Oryza sativa
Japonica Group
Length = 96
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 78 ttacattttgggacggagggagt 100
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 78 ttacattttgggacggagggagt 100
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggagt 54
|||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggagt 6
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tacattttgggacggagggagt 54
||||||||||||||||||||||
Sbjct: 24 tacattttgggacggagggagt 3
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
Indica Group
Length = 240
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tacattttgggacggagggagt 54
||||||||||||||||||||||
Sbjct: 24 tacattttgggacggagggagt 3
>RF00906;MIR1122;AC127019.29/109198-109062 3880:Medicago
truncatula (barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 ttacattttgggacggagggag 53
||||||||||||||||||||||
Sbjct: 28 ttacattttgggacggagggag 7
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaagacgtttttta 34
||||||||||||| | |||||||||| |||||||
Sbjct: 89 actccctccgtcccataatgtaagacatttttta 56
>RF00906;MIR1122;AAAA02025080.1/2043-2177 39946:Oryza sativa
Indica Group
Length = 135
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 tttttacattttgggacggagggagt 54
|||||| |||||||||||||||||||
Sbjct: 31 tttttatattttgggacggagggagt 6
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 33 tacattttgggacggagggagt 54
||||||||||||||||||||||
Sbjct: 27 tacattttgggacggagggagt 6
>RF00906;MIR1122;AC135864.5/73183-73340 39947:Oryza sativa
Japonica Group
Length = 158
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgta 22
||||||||||||||||||||||
Sbjct: 6 actccctccgtcctaaaatgta 27
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 153 actccctccgtcctaaaatataaga 129
>RF00906;MIR1122;AP003913.3/29133-29264 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 tttttacattttgggacggagggagt 54
|||||| |||||||||||||||||||
Sbjct: 31 tttttatattttgggacggagggagt 6
>RF00906;MIR1122;CT827956.1/52813-52688 4530:Oryza sativa (rice)
Length = 126
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tttttacattttgggacggagggagt 54
|||||| |||||||||||||||||||
Sbjct: 96 tttttatattttgggacggagggagt 121
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa Indica
Group
Length = 156
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 tttttacattttgggacggagggagt 54
|||||| |||||||||||||||||||
Sbjct: 126 tttttatattttgggacggagggagt 151
>RF01058;MIR806;AAAA02026783.1/9702-9457 39946:Oryza sativa Indica
Group
Length = 246
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 34 acattttgggacggagggagt 54
|||||||||||||||||||||
Sbjct: 23 acattttgggacggagggagt 3
>RF01058;MIR806;AACV01014787.1/638-878 39947:Oryza sativa Japonica
Group
Length = 241
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 acattttgggacggagggagt 54
|||||||||||||||||||||
Sbjct: 219 acattttgggacggagggagt 239
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 cctccgtcctaaaatgtaagacgtttttt 33
||||||||| | |||||||||||||||||
Sbjct: 86 cctccgtcccataatgtaagacgtttttt 58
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaagacgtttttt 33
||||||||||||| | ||||||||| |||||||
Sbjct: 6 actccctccgtcccataatgtaagaggtttttt 38
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaagacgtttttt 33
||||||||||||| | ||||||||||| |||||
Sbjct: 6 actccctccgtcccataatgtaagacgcttttt 38
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 cctccgtcctaaaatgtaagacgtttttt 33
||||||||| | |||||||||||||||||
Sbjct: 10 cctccgtcccataatgtaagacgtttttt 38
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 cctccgtcctaaaatgtaagacgtttttt 33
||||||||| | |||||||||||||||||
Sbjct: 91 cctccgtcccataatgtaagacgtttttt 63
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 cctccgtcctaaaatgtaagacgtttttt 33
||||||||| | |||||||||||||||||
Sbjct: 62 cctccgtcccataatgtaagacgtttttt 34
>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
Indica Group
Length = 162
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 157 actccctccgtcctaaaatataaga 133
>RF00906;MIR1122;AAAA02007259.1/4313-4455 39946:Oryza sativa Indica
Group
Length = 143
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 138 actccctccgtcctaaaatataaga 114
>RF00906;MIR1122;AP004047.3/87830-87972 39947:Oryza sativa Japonica
Group
Length = 143
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 138 actccctccgtcctaaaatataaga 114
>RF00906;MIR1122;AAAA02034725.1/24676-24788 39946:Oryza sativa
Indica Group
Length = 113
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 6 actccctccgtcctaaaatataaga 30
>RF00906;MIR1122;AAAA02004745.1/3305-3414 39946:Oryza sativa Indica
Group
Length = 110
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 105 actccctccgtcctaaaatataaga 81
>RF00906;MIR1122;CR855143.1/66136-66012 4530:Oryza sativa (rice)
Length = 125
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 ttttacattttgggacggagggagt 54
||||| |||||||||||||||||||
Sbjct: 96 ttttatattttgggacggagggagt 120
>RF00906;MIR1122;AP008214.1/19205826-19205903 39947:Oryza sativa
Japonica Group
Length = 78
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcctaaaatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 73 actccctccgtcctaaaatataaga 49
>RF00906;MIR1122;AL606691.4/2041-1917 39947:Oryza sativa Japonica
Group
Length = 125
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 ttttacattttgggacggagggagt 54
||||| |||||||||||||||||||
Sbjct: 96 ttttatattttgggacggagggagt 120
