miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 163 bits (82), Expect = 4e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 64
Query: 61 atggatggngtgcacggagccaagc 85
|||||||| ||||||||||||||||
Sbjct: 65 atggatggcgtgcacggagccaagc 89
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 89.7 bits (45), Expect = 5e-18
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttct----gcgagaggttgcc 56
|||||||||||||||||||||||||| |||||||| ||||||| || |||||||||
Sbjct: 5 gcctggctccctgtatgccactcatccagagcaac-aacttctgggagctagaggttgct 63
Query: 57 tatgatggatggngtgcacggagccaagc 85
|||||||| ||| ||||||||||||||||
Sbjct: 64 tatgatggctggcgtgcacggagccaagc 92
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaa 37
|||||||||||||||||||||||||||||| ||||||
Sbjct: 5 gcctggctccctgtatgccactcatctagatcaacaa 41
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcat 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcat 29
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaac 35
||||||||||||||||||||| ||| |||| ||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagaccaac 39
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
