miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 341 bits (172), Expect = 2e-93
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 atcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctc 130
Query: 121 aggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 121 bits (61), Expect = 3e-27
Identities = 145/170 (85%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 62
|||||||||||||||||||||| | || || ||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 cccacagccctataagca-gagattataattttggataggcttgtggcttgcatatctca 121
||||||||||||| | || || | ||||| ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcatatctca 115
Query: 122 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 171
||||||| ||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 121 bits (61), Expect = 3e-27
Identities = 147/173 (84%), Gaps = 2/173 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 60
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 atcccacagccctataagcagagattataattttggataggcttgtggcttgcatatctc 120
||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 71 atcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatatctc 130
Query: 121 aggagcttcatta-ccttgtattagatccttgtttggattgaagggagctcta 172
||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 131 aggagctgcattatccaagt-ttagatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 115 bits (58), Expect = 2e-25
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 62
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 122
||||||||||| | || || | || ||| |||||||| || |||||||||||||
Sbjct: 73 tccacagccctacccgaagttatactttttctgggtaggcttgcggtttgcatatctcag 132
Query: 123 gagcttcattaccttgtattagatccttgtttggattgaagggagctcta 172
||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct: 133 gagctgcattaccctaagcttaatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 95.6 bits (48), Expect = 2e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 60
|||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 61 atcc 64
||||
Sbjct: 71 atcc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 69.9 bits (35), Expect = 1e-11
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 60
|||||||||||||||||||| ||| ||||| || |||||||||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 atcccacagccctat 75
|| || |||||||||
Sbjct: 71 attcctcagccctat 85
Score = 44.1 bits (22), Expect = 6e-04
Identities = 55/65 (84%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 110 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 167
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 183
Query: 168 ctcta 172
|||||
Sbjct: 184 ctcta 188
