miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagccca 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagccca 37
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagccca 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagccca 37
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagccca 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagccca 37
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccatcagaacagtgatg 47
|||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 5 gcctggctccctgtatgccatttgtagagtccatcacgacagtgatg 51
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccatcagaac 40
||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 5 gcctggctccctgcatgccatttgcatagctcatcagaac 44
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccatc 35
||||||||||||||||||||| ||| |||||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatc 39
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcagagcccatc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 5 gcctggctccctgtatgccatttggagagctcatc 39
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgca 26
||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgca 30
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgca 26
||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgca 30
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgca 26
||||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccatctgca 30
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccat 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccacttgc 29
