miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 64
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 5 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 64
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctgg 32
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 aacatgaaccgatcgataaacctctgcatcca 87
|||||||| |||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctgg 32
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 catgaaccgatcgataaacctctgcatcca 87
|||||| |||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatcca 94
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aaaaacatgaaccgatcgataaacctctgcatcca 87
|||| |||||| ||||||||||||||||||||||
Sbjct: 52 aaaagcatgaatagatcgataaacctctgcatcca 86
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 aaacatgaaccgatcgataaacctctgcatcca 87
||||||||| || ||||||||||||||||||||
Sbjct: 56 aaacatgaatcggtcgataaacctctgcatcca 88
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||
Sbjct: 9 gcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aaaaacatgaaccgatcgataaacctctgcatcca 87
|||| ||||||| ||||||||||||| ||||||||
Sbjct: 56 aaaagcatgaacagatcgataaacctgtgcatcca 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatcca 130
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatcca 156
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatcca 157
