miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 153 tctttctctgagcttggactgaagggagctcct 185
|||||||||| ||||||||||||||||||||||
Sbjct: 148 tctttctctgtgcttggactgaagggagctcct 180
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 150 ccctctttctctgagcttggactgaagggagctcct 185
|||||||| |||| ||||||||||||||||||||||
Sbjct: 157 ccctctttttctgtgcttggactgaagggagctcct 192
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 ttctctgagcttggactgaagggagctcc 184
||||||| |||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctcc 171
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 ttctctgagcttggactgaagggagctcc 184
||||||| |||||||||||||||||||||
Sbjct: 159 ttctctgtgcttggactgaagggagctcc 187
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 150 ccctctttctctgagcttggactgaagggagctcct 185
|||||||| || | ||||||||||||||||||||||
Sbjct: 156 ccctctttttccgtgcttggactgaagggagctcct 191
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 tctgagcttggactgaagggagctcct 185
|||| ||||||||||||||||||||||
Sbjct: 168 tctgtgcttggactgaagggagctcct 194
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tctgagcttggactgaagggagctcc 184
|||| |||||||||||||||||||||
Sbjct: 160 tctgtgcttggactgaagggagctcc 185
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 152 ctctttctctgagcttggactgaagggagctcct 185
|||||| |||| | ||||||||||||||||||||
Sbjct: 156 ctctttatctgtgtttggactgaagggagctcct 189
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tctgagcttggactgaagggagctcc 184
|||| |||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
