miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 270 bits (136), Expect = 6e-72
Identities = 160/168 (95%)
Strand = Plus / Plus
Query: 3 gagctttcttcggtccactcatagaataatatgtgagatttaattgactctcgactcatt 62
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactcatt 72
Query: 63 catccaaataccaaatgaaagaatatgtagacatatggtaaatgaatgaatgatgctaga 122
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 73 catccaaataccaaatgaaagaatttgttctcatatggtaaatgaatgaatgatgcgaga 132
Query: 123 gacaaattgaatcttcacttctctatgcttggactgaagggagctccc 170
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 133 gacaaattgagtcttcacttctctatgcttggactgaagggagctccc 180
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 73.8 bits (37), Expect = 7e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 102 aaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaag 161
|||||| |||||||||| ||||||||||||||||| | || |||| ||||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 162 ggagctccc 170
|||||||||
Sbjct: 174 ggagctccc 182
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 69.9 bits (35), Expect = 1e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 100 gtaaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactga 159
|||||||| |||||||||| ||||||||||| ||||| | || || ||||||||||||
Sbjct: 101 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 160
Query: 160 agggagctccc 170
|||||||||||
Sbjct: 161 agggagctccc 171
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 63.9 bits (32), Expect = 7e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 100 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 158
|||||||| |||||||||| ||||||||||||||||| | |||| || | |||||||||
Sbjct: 141 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 199
Query: 159 aagggagctccc 170
||||||||||||
Sbjct: 200 aagggagctccc 211
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 101 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 160
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 172
Query: 161 gggagctccc 170
||||||||||
Sbjct: 173 gggagctccc 182
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 101 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 160
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 161 gggagctccc 170
||||||||||
Sbjct: 171 gggagctccc 180
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 101 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 160
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 161 gggagctccc 170
||||||||||
Sbjct: 171 gggagctccc 180
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 56.0 bits (28), Expect = 2e-07
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 100 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 158
|||||||| |||||||||| ||||||||||||||| | | |||| || | |||||||||
Sbjct: 108 gtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactg 166
Query: 159 aagggagctccc 170
||||||||||||
Sbjct: 167 aagggagctccc 178
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 56.0 bits (28), Expect = 2e-07
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 100 gtaaatgaatgaatgatgctagagacaaattgaatctt-cacttctctatgcttggactg 158
|||||||||||| |||||| |||||||||| |||||| ||||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 159 aagggagctccc 170
||||||||||||
Sbjct: 165 aagggagctccc 176
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 135 cttcacttctctatgcttggactgaagggagctccc 170
|||| ||||||| |||||||||||||||||||||||
Sbjct: 153 cttctcttctctgtgcttggactgaagggagctccc 188
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 140 cttctctatgcttggactgaagggagctccc 170
||||||| |||||||||||||||||||||||
Sbjct: 142 cttctctgtgcttggactgaagggagctccc 172
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 141 ttctctatgcttggactgaagggagctccc 170
||||||||| ||||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctccc 180
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 141 ttctctatgcttggactgaagggagctcc 169
|||||| ||||||||||||||||||||||
Sbjct: 151 ttctctgtgcttggactgaagggagctcc 179
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 48.1 bits (24), Expect = 4e-05
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 100 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 158
|||||||| |||||||||| ||||||||||| ||||| | |||| || | ||||||||
Sbjct: 96 gtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttc-ctgttattggactg 154
Query: 159 aagggagctccc 170
||||||||||||
Sbjct: 155 aagggagctccc 166
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccc 170
|||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccc 186
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccc 170
|||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctccc 179
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccc 170
|||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccc 186
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctccc 170
|||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctccc 181
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 141 ttctctatgcttggactgaagggagctccc 170
||||||||| |||||||||||| |||||||
Sbjct: 151 ttctctatgattggactgaaggtagctccc 180
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctcc 169
||||||||||||||||||||||
Sbjct: 172 tgcttggactgaagggagctcc 193
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctcc 169
||||||||||||||||||||||
Sbjct: 170 tgcttggactgaagggagctcc 191
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgcttggactgaagggagctcc 169
||||||||||||||||||||||
Sbjct: 169 tgcttggactgaagggagctcc 190
