miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 256 bits (129), Expect = 7e-68
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 6 tgcaattgggggcagcaagctagaggtggcaactgcataatttgcaagaaattgttggct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaattgggggcagcaagctagaggtggcaactgcataatttgcaagaaattgttggct 60
Query: 66 gaagatcataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagatcataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcct 120
Query: 126 cctgttgcc 134
|||||||||
Sbjct: 121 cctgttgcc 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcc 124
||||||||| |||||||||||| |||| |||||||||||
Sbjct: 50 ttcttgcaaattatgcagttgccacctctagcttgctgcc 11
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 16 ggcagcaagctagaggtggcaactgcataatttgcaagaa 55
||||||||||| |||| |||||||||||| |||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 97.6 bits (49), Expect = 4e-20
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 11 ttgggggcagcaagctagaggtggcaactgcataatttgcaagaaattgttggctgaaga 70
|||||||||||||||| ||| |||||||||| ||||||| ||||||| ||| |
Sbjct: 6 ttgggggcagcaagctcgagacaacaactgcatagcatgcaagagcttgttggttgaggg 65
Query: 71 tcataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 66 tcataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 122
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 90 gcaagttatgcagttgctgcctcaagcttgctgcctcc 127
||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctcc 127
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 74 taccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
|||||||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 70 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcc 124
|||||||||| ||||||||||||||||| |||||||||||
Sbjct: 50 ttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 72 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
||||||||| || |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 66 cataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagct 117
|||||||||| ||||||||||||||||| ||||
Sbjct: 50 ttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 72 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
|||||||||||| |||||||||| | |||||||| || ||||||||||||||||||
Sbjct: 66 cataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 121
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
|||||||||| ||||||||||||| ||| ||||||| ||||||
Sbjct: 50 ttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 118 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 160
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 124 ttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 166
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 127
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 116 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcc 124
|||||||||||| |||||||| ||||||||||||||||||
Sbjct: 190 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcc 124
||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 40 ttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 85 ttcttgcaagttatgcagttgctgcctcaagcttgctgcc 124
||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 50 ttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
