miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
          (thale cress)
          Length = 84

 Score = 95.6 bits (48), Expect = 7e-20
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagaagagagtgagcacacaaaagtaatctgcatat-actgcatttgcttctcttgcgtg 59
          |||||||||||||||||||||| | ||| ||||||| | |||| ||||||||||||||||
Sbjct: 5  cagaagagagtgagcacacaaaggcaatttgcatatcattgcacttgcttctcttgcgtg 64

                          
Query: 60 ctcactgctctttctg 75
          ||||||||||||||||
Sbjct: 65 ctcactgctctttctg 80




>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cagaagagagtgagcacacaaa 22
          ||||||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacacaaa 26




>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
          (sorghum)
          Length = 91

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 gcgtgctcactgctctttctg 75
          |||||||||||||||||||||
Sbjct: 67 gcgtgctcactgctctttctg 87