miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 99.6 bits (50), Expect = 7e-21
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 16 actgcattacttgcaagaaaggcacaaaatc-attagatgat--tacttgtggctttctt 72
||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 73 gcaagttgtgcagttgctgcctcaagctt 101
|||||||||||||||| ||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagctt 151
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaaggcacaa 42
|||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 151 aagcttgaggcaacaactgcacaacttgcaagaaagccacaa 110
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 aactgcattacttgcaagaaaggcacaa 42
|||||||||||||||||||||| |||||
Sbjct: 31 aactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 57 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 179 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagctt 223
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaaggcacaa 42
|||||||||||| |||||||||||||||||||||| |||||
Sbjct: 7 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaaggcacaa 42
|||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 223 aagcttgaggcaacaactgcacaacttgcaagaaagccacaa 182
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 59 cttgtggctttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 7
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 57 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 113 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 157
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaacaactgcattacttg 28
||||||||||||||||||||| ||||||
Sbjct: 17 aagcatgaggcaacaactgcagtacttg 44
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaaggcacaa 42
|||| ||||||| |||||||| ||||||||||||| |||||
Sbjct: 157 aagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 66 ctttcttgcaagttgtgcagttgctgcctcaagctt 101
||||||||||||||||||||||| ||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagctt 149
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaacaactgcattacttgcaag 32
|||||||||| ||||||||||||||||||||
Sbjct: 17 aagcatgaggttacaactgcattacttgcaag 48
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaag 36
|||| |||||||||||||||| |||||||||||||
Sbjct: 149 aagcttgaggcaacaactgcacaacttgcaagaaag 114
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaaaggcacaa 42
|||||||||||| |||||||||||||||||||||| |||||
Sbjct: 17 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 56 ttacttgtggctttcttgcaagttgtgcagttgctgcctcaagctt 101
||||||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 62 ttacttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 17
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 68 ttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagctt 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaacaactgcattacttgcaagaa 34
|||| ||||||| ||||||||| |||||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 69 tcttgcaagttgtgcagttgctgcctcaagctt 101
||||||||||| |||||||||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagctt 113
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||||||||||||||||||| || |||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagctt 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 tttcttgcaagttgtgcagttgctgcctcaagct 100
||||||||||| | ||||||||||||||| ||||
Sbjct: 51 tttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgcctcaagctt 101
|||||||||||||||||||||| || |||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagctt 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 67 tttcttgcaagttgtgcagttgctgcctcaagctt 101
||||||||||| | ||||||||||||||| |||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagctt 17
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gcaagttgtgcagttgctgcctcaagctt 101
||||||| |||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagctt 118
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 67 tttcttgcaagttgtgcagttgctgcctcaagctt 101
||||||||||| |||||||||| || |||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagctt 112
