miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 222 bits (112), Expect = 7e-58
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 tgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccgtgc 63
Query: 61 tgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatcca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatcca 115
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 tgggcgcagtggtttatcgatctcttccctgccttgtgctgctccg 46
|||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 4 tgggcgcagtggtttatcgatctcttccttgccttgtgctggtccg 49
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 77 acaacgcaggaatcgatcgataagcctctgcatcca 112
||||||| ||||||| ||||||| ||||||||||||
Sbjct: 96 acaacgcgggaatcggtcgataaacctctgcatcca 131
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 tgggcgcagtggtttatcgatctcttccctgccttgtgct 40
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 4 tgggcgcagtggtttatcgatctcttccttgccttgtgct 43
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 acaacgcaggaatcgatcgataagcctctgcatcca 112
||||||| ||||||||||||||| ||||||||||||
Sbjct: 95 acaacgcgggaatcgatcgataaacctctgcatcca 130
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 tgggcgcagtggtttatcgatctcttccctgccttgtg 38
|||||||||||||||||||||| |||||||||||||||
Sbjct: 4 tgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 acaacgcaggaatcgatcgataagcctctgcatcca 112
||||||| ||||||||||||||| ||||||||||||
Sbjct: 121 acaacgcgggaatcgatcgataaacctctgcatcca 156
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 tgggcgcagtggtttatcgatctcttccctgccttgtg 38
|||||||||||||||||||||| |||||||||||||||
Sbjct: 4 tgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 acaacgcaggaatcgatcgataagcctctgcatcca 112
||||||| ||||||||||||||| ||||||||||||
Sbjct: 122 acaacgcgggaatcgatcgataaacctctgcatcca 157
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 79 aacgcaggaatcgatcgataagcctctgcatcca 112
|||||| |||||||||||||| ||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatcca 94
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 gaatcgatcgataagcctctgcatcca 112
|||||||||||||| ||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 gaatcgatcgataagcctctgcatcca 112
|||||||||||||| ||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcca 89
