miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
          (castor bean)
          Length = 194

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 2  gagctccttgaagtccaatagaggatct 29
          ||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatct 40





>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
          (papaya)
          Length = 194

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  agagctccttgaagtccaatagaggat 27
          |||||||||||||||||||||||||||
Sbjct: 12 agagctccttgaagtccaatagaggat 38





>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                            
Query: 2  gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctg 51
          |||||||||||||||||||||||| ||| | |||| | || |||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 62





>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  gagctccttgaagtccaatagagg 25
          ||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36





>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  gagctccttgaagtccaataga 23
          ||||||||||||||||||||||
Sbjct: 1  gagctccttgaagtccaataga 22