miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00721;MIR475;AY728406.1/1-120 3694:Populus trichocarpa
Length = 120
Score = 149 bits (75), Expect = 1e-35
Identities = 108/118 (91%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctga 62
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 63 aatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 118
>RF00721;MIR475;AARH01003574.1/486567-486472 3694:Populus
trichocarpa
Length = 96
Score = 83.8 bits (42), Expect = 5e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 3 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 44
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 47
Score = 63.9 bits (32), Expect = 4e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 71 aaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||||||||||||| |||| ||||||||||| | ||||||||||||
Sbjct: 46 aaaacattgactcctgatattccactcttacagagtccattgattaag 93
>RF00721;MIR475;AY728407.1/4-123 3694:Populus trichocarpa
Length = 120
Score = 71.9 bits (36), Expect = 2e-12
Identities = 99/118 (83%), Gaps = 4/118 (3%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||| |||||||||||||||||||| | | ||||||| |||||||||||||||| |
Sbjct: 4 cttgaacaatggccattgtaagagta-agtggtccatgagtcaataactctctttgcaga 62
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||| ||| ||| |||||||||| |||||||| |||||| || ||||||||||||
Sbjct: 63 aatgcatgacaaagcattgactcc---tatttcacccttacaatgtccattgattaag 117
>RF00721;MIR475;AARH01003768.1/271930-272004 3694:Populus
trichocarpa
Length = 75
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 acattgactcctggtatttcactcttaca 102
||||||||||||| |||||||||||||||
Sbjct: 28 acattgactcctgatatttcactcttaca 56
>RF00721;MIR475;AARH01005578.1/44382-44496 3694:Populus trichocarpa
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 94 actcttacagtgcccattgatta 116
|||||||||||||||||||||||
Sbjct: 28 actcttacagtgcccattgatta 6
