miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 123 bits (62), Expect = 7e-28
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 36 actgcattacttgcaagaaaggcacaaaatc-attagatgat--tacttgtggctttctt 92
||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 93 gcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
|||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 tgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||| ||||||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 1 tgcatatggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||| ||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 157 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaagccacaa 110
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 105 bits (53), Expect = 2e-22
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 77 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgc 136
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 113 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgc 172
Query: 137 c 137
|
Sbjct: 173 c 173
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttg 48
||||||||||||||||||||||||||| ||||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtacttg 44
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||| ||||| ||||||| |||||||| ||||||||||||| |||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 77 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 127
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 179 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||| ||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 229 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaagccacaa 182
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 79 cttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 127
|||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 83.8 bits (42), Expect = 6e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 5 tgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 62
|||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 76 ttacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 127
||||||||| ||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 62 ttacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 83.8 bits (42), Expect = 6e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 86 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctg 135
||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccgtctg 163
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 5 tgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaag 52
|||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaag 48
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaaag 56
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 155 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaag 114
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 77.8 bits (39), Expect = 4e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
|||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagct 120
||||||||||| | ||||||||||||||| ||||
Sbjct: 51 tttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 77.8 bits (39), Expect = 4e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
|||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 127
||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 88 ttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 130
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 15 ggcaccaagcatgaggcaacaactgcattacttgcaagaa 54
|||| ||||| ||||||| ||||||||| |||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 93 gcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 89 tcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 69.9 bits (35), Expect = 9e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcc 137
||||||||||| |||||||||| || |||||||||||||||||||| ||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 87 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 130
||||||||||| | ||||||||||| ||| ||||||| ||||||
Sbjct: 51 tttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
