miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 69.9 bits (35), Expect = 1e-11
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 97 tttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttggactgaag 156
|||||||||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||
Sbjct: 115 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 174
Query: 157 ggagctc 163
|||||||
Sbjct: 175 ggagctc 181
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 91 gatgtgtttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttgga 150
||||| ||||||||||||||| || ||||| ||||| ||| || ||||| ||||||||
Sbjct: 105 gatgtctttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttgga 164
Query: 151 ctgaagggagctc 163
|||||||||||||
Sbjct: 165 ctgaagggagctc 177
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gagctctcttcagtccagtccaag 24
||||||||||||||||||||||||
Sbjct: 13 gagctctcttcagtccagtccaag 36
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 142 cgtcttggactgaagggagctc 163
||||||||||||||||||||||
Sbjct: 196 cgtcttggactgaagggagctc 217
