miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
deltoides
Length = 120
Score = 137 bits (69), Expect = 3e-32
Identities = 92/99 (92%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 1 cattgagtgcagcgttgatgaaatcctacattttgtgctcttaaactgttaccaaccctt 60
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgttaccaaccctt 71
Query: 61 tat---ccatggcatcatttcaccagcgctgcattcaat 96
||| ||||||||||||||||||||||||||||||||
Sbjct: 72 tatggggcatggcatcatttcaccagcgctgcattcaat 110
>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 atcatttcaccagcgctgcattcaa 95
|||||||||||||||||||||||||
Sbjct: 79 atcatttcaccagcgctgcattcaa 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cattgagtgcagcgttgatgaaat 24
||||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaat 35
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cattgagtgcagcgttgatgaaa 23
|||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaa 34
>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 attgagtgcagcgttgatgaaatcct 27
||||||||||||||||||||| ||||
Sbjct: 13 attgagtgcagcgttgatgaagtcct 38
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cattgagtgcagcgttgatgaa 22
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
