miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 327 bits (165), Expect = 3e-89
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 10 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaagt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaagt 60
Query: 70 cacaagaaacacatgttattacaatggataatcaatgggtcatcatactatgactttctt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaagaaacacatgttattacaatggataatcaatgggtcatcatactatgactttctt 120
Query: 130 gcaagttgtgcagttgttgcctcaagcttgctgcctccgtctgtc 174
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaagttgtgcagttgttgcctcaagcttgctgcctccgtctgtc 165
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 89.7 bits (45), Expect = 1e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 123 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 160
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 10 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaag 57
|||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcattagtcaggaactgcattacttgcaag 48
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 83.8 bits (42), Expect = 8e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 123 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 164
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 ggcaccaagcatgaggttacaactgcattacttgcaag 57
|||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaag 38
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 81.8 bits (41), Expect = 3e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 119 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
|||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75 atgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 124 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 164
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 79.8 bits (40), Expect = 1e-14
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 124 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 73.8 bits (37), Expect = 7e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 123 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 122 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 166
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 11 gcatatggtggcaccaagcatgaggttacaactgcattacttg 53
|||| ||| |||||||||||||||| ||||||||| ||||||
Sbjct: 2 gcatgtggcggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 73.8 bits (37), Expect = 7e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 119 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
|||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 73 atgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 121
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 125 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 63.9 bits (32), Expect = 7e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 10 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaag 57
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgcaag 48
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 130 gcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
||||||| |||||||| |||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctcc 127
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 126 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 167
||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 122
