miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 71
Query: 61 acatctgtcttttcatgtgttctcaggtcacccct 95
|||||||||||||||||||||||||||||||||||
Sbjct: 72 acatctgtcttttcatgtgttctcaggtcacccct 106
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 77.8 bits (39), Expect = 2e-14
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 1 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 60
||||| |||||||||||||| | | ||||||||||||||||||||| || ||||| | ||
Sbjct: 12 agggttgatatgagaacacacgagtaatcaacggctgtaatgacgctacgtcattgttac 71
Query: 61 acatctgtcttttcatgtgttctcaggtcacccct 95
| ||| ||||||||||||||||||||||||||
Sbjct: 72 agctct-cgttttcatgtgttctcaggtcacccct 105
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 71.9 bits (36), Expect = 1e-12
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 60
||||| |||||||||||||| | ||||||||||||| ||| ||||| || ||||| |
Sbjct: 12 agggttgatatgagaacacacgagcaatcaacggctataacgacgctacgtcattgt--t 69
Query: 61 acatctgtcttttcatgtgttctcaggtcacccct 95
||| || || |||||||||||||||||||||||||
Sbjct: 70 acagctctcgtttcatgtgttctcaggtcacccct 104
