miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 atattggtgcggttcaatcggagaactttgctctttgtttagagagctatgttgtttgat 60
||||||||||||||||||| |||| | ||||||| | | ||||| | |||||||||||
Sbjct: 12 atattggtgcggttcaatcagagatcattgctctatatatagagcttt-tgttgtttgat 70
Query: 61 tgagccgtgccaatat 76
||||||||||||||||
Sbjct: 71 tgagccgtgccaatat 86
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 tgttgtttgattgagccgtgccaatat 76
|||||||||||||||||||||||||||
Sbjct: 60 tgttgtttgattgagccgtgccaatat 86
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 tgttgtttgattgagccgtgccaatat 76
|||||||||||||||||||||||||||
Sbjct: 59 tgttgtttgattgagccgtgccaatat 85
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 43 agagctatgttgtttgattgagccgtgccaatat 76
|||||| | |||||||||||||||||||||||||
Sbjct: 46 agagctctattgtttgattgagccgtgccaatat 79
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 44 gagctatgttgtttgattgagccgtgccaatat 76
||||| |||| ||||||||||||||||||||||
Sbjct: 55 gagctttgttttttgattgagccgtgccaatat 87
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tgtttgattgagccgtgccaatat 76
||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatat 131
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tgtttgattgagccgtgccaatat 76
||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatat 131
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgttgtttgattgagccgtgccaatat 76
||||||| |||||||||||||||||||
Sbjct: 63 tgttgttcgattgagccgtgccaatat 89
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 82 gtttgattgagccgtgccaatat 104
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgttgtttgattgagccgtgccaatat 76
|||| ||||||||||||||||||||||
Sbjct: 65 tgttatttgattgagccgtgccaatat 91
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 79 gtttgattgagccgtgccaatat 101
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgttgtttgattgagccgtgccaatat 76
|||| ||||||||||||||||||||||
Sbjct: 63 tgttatttgattgagccgtgccaatat 89
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatat 91
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatat 130
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatat 109
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatat 125
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatat 112
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatat 101
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatat 121
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatat 105
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatat 89
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ttgattgagccgtgccaatat 76
|||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatat 121
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ttgattgagccgtgccaatat 76
|||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatat 122
