miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 73.8 bits (37), Expect = 2e-13
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||||
Sbjct: 16 aagctgccagcatgatcttaacttccctc-catgg-tggggaaagatcagatcatgtggc 73
Query: 61 agttt 65
|||||
Sbjct: 74 agttt 78
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 65.9 bits (33), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
|||||||||||||||||| || | |||| | | ||||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaatcttcctc-cctcgttgaggagagatcagatcatgtggc 74
Query: 61 agttt 65
|||||
Sbjct: 75 agttt 79
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 58.0 bits (29), Expect = 1e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
|||||||||||||||||| ||||| | || ||| || || |||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctaaacttgcttccctttgt-gaacagagatcagatcatgtggc 74
Query: 61 agttt 65
|||||
Sbjct: 75 agttt 79
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 52.0 bits (26), Expect = 8e-07
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagag-atcagatcatgtgg 59
|||||||||||||||||||| | | |||| ||| |||||||| || | ||||||||||||
Sbjct: 16 aagctgccagcatgatcttagccttcctc-ctttgttgaggaaagaaacagatcatgtgg 74
Query: 60 cagttt 65
||||||
Sbjct: 75 cagttt 80
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccct 28
|||||||||||||||||| |||||||||
Sbjct: 16 aagctgccagcatgatctcaacttccct 43
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttcc 26
|||||||||||||||||| |||||||
Sbjct: 16 aagctgccagcatgatctaaacttcc 41
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaac 22
||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatcttaac 37
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gaggagagatcagatcatgtggcag 62
||||| |||||||||||||||||||
Sbjct: 63 gaggaaagatcagatcatgtggcag 87
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gaggagagatcagatcatgtggcag 62
||||| |||||||||||||||||||
Sbjct: 56 gaggaaagatcagatcatgtggcag 80
