miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 77.8 bits (39), Expect = 2e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 51 ctgttgtggctccactcatgcactgcctcttccctggct 89
|||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 52 tgttgtggctccactcatgcactgcctcttccctggc 88
||||||||||| |||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 51 ctgttgtggctccactcatgcactgcctcttccctggct 89
||||||||||| | |||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggct 139
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 56.0 bits (28), Expect = 8e-08
Identities = 76/91 (83%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 agacagggacgaggtagagcatggatggagttcccaacagaaca--gtcaagctgttgtg 58
|||| |||||||||||| ||||||||||| | ||||||| | || |||||||| |
Sbjct: 18 agacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagctgttttt 77
Query: 59 gctccactcatgcactgcctcttccctggct 89
|||| || |||||||||||||||||||||||
Sbjct: 78 gctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 52 tgttgtggctccactcatgcactgcctcttccctggct 89
|||| |||||| || |||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggct 101
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 catgcactgcctcttccctggct 89
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 51 ctgttgtggctccactcatgcactgcctcttccctggct 89
||||| |||||| || | |||||||||||||||||||||
Sbjct: 64 ctgttttggctctacccctgcactgcctcttccctggct 102
