miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 83.8 bits (42), Expect = 7e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 61
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 tccaca 67
||||||
Sbjct: 73 tccaca 78
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 97 taggcttgtggcttgcatacctcaggagctgcattacc 134
|||||||| || ||||||| ||||||||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacc 145
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 77.8 bits (39), Expect = 4e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaa 60
||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||| |
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 ttccaca 67
| |||||
Sbjct: 72 tcccaca 78
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 95 gataggcttgtggcttgcatacctcaggagctgcattacct 135
||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacct 146
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 61
|||||||||||||||||||||||| | |||| ||| ||| |||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 62 tccaca 67
|||||
Sbjct: 61 cccaca 66
Score = 50.1 bits (25), Expect = 1e-05
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 106 ggcttgcatacctcaggagctgcattacctga-gttgcatcatgttttggattgaaggga 164
|||||||||| |||||||||| ||||||| | ||| ||| | ||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160
Query: 165 gctct 169
|||||
Sbjct: 161 gctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 95 gataggcttgtggcttgcatacctcaggagctgcatta 132
||||||||||||||||||||| ||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcatta 143
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctga 52
||||||||||||||||||||||| | | || || ||| ||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctga 63
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatg 58
||||||||||||||||||||||| | | ||||| ||| |||| ||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagatgttgctaggtt-gattgagctgctgagctatga 59
||||||||||||||||||| ||||||| | | ||||| |||||||||||||| |||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatgg 70
Query: 60 attcc 64
|||||
Sbjct: 71 attcc 75
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 143 atcatgttttggattgaagggagctct 169
||||| |||||||||||||||||||||
Sbjct: 161 atcattttttggattgaagggagctct 187
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 95 gataggcttgtggcttgcatacctcaggagctgcat 130
||||||||| |||||||||| || ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222
